Light Microscopy:
other:Article Title: Electricity on Rubber Surfaces: A New Energy Conversion Effect
Article Snippet: Specific experimental conditions and setups A few experiments were conducted in a dark room, where the rubber surface was monitored with a Canon EOS Rebel T1i camera with Shutter Speed adjusted to 30s, Aperture F20 and ISO 3200, as in previous work.
Software:Article Title: DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.
Article Snippet: .. Software and code Policy information about availability of computer code Data collection For growth phenotypes: Canon EOS Rebel T1i camera For microscopy: Keyence BZ-X800, Leica SP5 For qPCR: CFX ConnectTM Real-Time PCR Detection System For polysome profile: Brandel Density Gradient Fractionation System For western blots: Biorad Chemidoc MP Imaging system For RNA-seq: Illumina NextSeq500 Data analysis For phenotype and confocal imaging: LAS X, Fiji software For phylogenetic analysis: MEGA7, Interactive Tree of Life (iTOL) software For polysome profile: Brandel PeakChart software For RNA-seq and RNA decay data: R v3.4, systemPipeR v1.20.0, Bowtie2 v2.2.5, Tophat v2.0.14, edgeR v3.28.1, RNAdecay, ggplot2 v3.3.0, easyGplot2 1.0, ComplexHeatmap 2.2.0 For statistical analysis: R v3.4, agricolae v1.3-2 For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers. ..
Microscopy:Article Title: DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.
Article Snippet: .. Software and code Policy information about availability of computer code Data collection For growth phenotypes: Canon EOS Rebel T1i camera For microscopy: Keyence BZ-X800, Leica SP5 For qPCR: CFX ConnectTM Real-Time PCR Detection System For polysome profile: Brandel Density Gradient Fractionation System For western blots: Biorad Chemidoc MP Imaging system For RNA-seq: Illumina NextSeq500 Data analysis For phenotype and confocal imaging: LAS X, Fiji software For phylogenetic analysis: MEGA7, Interactive Tree of Life (iTOL) software For polysome profile: Brandel PeakChart software For RNA-seq and RNA decay data: R v3.4, systemPipeR v1.20.0, Bowtie2 v2.2.5, Tophat v2.0.14, edgeR v3.28.1, RNAdecay, ggplot2 v3.3.0, easyGplot2 1.0, ComplexHeatmap 2.2.0 For statistical analysis: R v3.4, agricolae v1.3-2 For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers. ..
Real-time Polymerase Chain Reaction:Article Title: DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.
Article Snippet: .. Software and code Policy information about availability of computer code Data collection For growth phenotypes: Canon EOS Rebel T1i camera For microscopy: Keyence BZ-X800, Leica SP5 For qPCR: CFX ConnectTM Real-Time PCR Detection System For polysome profile: Brandel Density Gradient Fractionation System For western blots: Biorad Chemidoc MP Imaging system For RNA-seq: Illumina NextSeq500 Data analysis For phenotype and confocal imaging: LAS X, Fiji software For phylogenetic analysis: MEGA7, Interactive Tree of Life (iTOL) software For polysome profile: Brandel PeakChart software For RNA-seq and RNA decay data: R v3.4, systemPipeR v1.20.0, Bowtie2 v2.2.5, Tophat v2.0.14, edgeR v3.28.1, RNAdecay, ggplot2 v3.3.0, easyGplot2 1.0, ComplexHeatmap 2.2.0 For statistical analysis: R v3.4, agricolae v1.3-2 For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers. ..
Fractionation:Article Title: DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.
Article Snippet: .. Software and code Policy information about availability of computer code Data collection For growth phenotypes: Canon EOS Rebel T1i camera For microscopy: Keyence BZ-X800, Leica SP5 For qPCR: CFX ConnectTM Real-Time PCR Detection System For polysome profile: Brandel Density Gradient Fractionation System For western blots: Biorad Chemidoc MP Imaging system For RNA-seq: Illumina NextSeq500 Data analysis For phenotype and confocal imaging: LAS X, Fiji software For phylogenetic analysis: MEGA7, Interactive Tree of Life (iTOL) software For polysome profile: Brandel PeakChart software For RNA-seq and RNA decay data: R v3.4, systemPipeR v1.20.0, Bowtie2 v2.2.5, Tophat v2.0.14, edgeR v3.28.1, RNAdecay, ggplot2 v3.3.0, easyGplot2 1.0, ComplexHeatmap 2.2.0 For statistical analysis: R v3.4, agricolae v1.3-2 For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers. ..
Western Blot:Article Title: DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.
Article Snippet: .. Software and code Policy information about availability of computer code Data collection For growth phenotypes: Canon EOS Rebel T1i camera For microscopy: Keyence BZ-X800, Leica SP5 For qPCR: CFX ConnectTM Real-Time PCR Detection System For polysome profile: Brandel Density Gradient Fractionation System For western blots: Biorad Chemidoc MP Imaging system For RNA-seq: Illumina NextSeq500 Data analysis For phenotype and confocal imaging: LAS X, Fiji software For phylogenetic analysis: MEGA7, Interactive Tree of Life (iTOL) software For polysome profile: Brandel PeakChart software For RNA-seq and RNA decay data: R v3.4, systemPipeR v1.20.0, Bowtie2 v2.2.5, Tophat v2.0.14, edgeR v3.28.1, RNAdecay, ggplot2 v3.3.0, easyGplot2 1.0, ComplexHeatmap 2.2.0 For statistical analysis: R v3.4, agricolae v1.3-2 For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers. ..
Imaging:Article Title: DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.
Article Snippet: .. Software and code Policy information about availability of computer code Data collection For growth phenotypes: Canon EOS Rebel T1i camera For microscopy: Keyence BZ-X800, Leica SP5 For qPCR: CFX ConnectTM Real-Time PCR Detection System For polysome profile: Brandel Density Gradient Fractionation System For western blots: Biorad Chemidoc MP Imaging system For RNA-seq: Illumina NextSeq500 Data analysis For phenotype and confocal imaging: LAS X, Fiji software For phylogenetic analysis: MEGA7, Interactive Tree of Life (iTOL) software For polysome profile: Brandel PeakChart software For RNA-seq and RNA decay data: R v3.4, systemPipeR v1.20.0, Bowtie2 v2.2.5, Tophat v2.0.14, edgeR v3.28.1, RNAdecay, ggplot2 v3.3.0, easyGplot2 1.0, ComplexHeatmap 2.2.0 For statistical analysis: R v3.4, agricolae v1.3-2 For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers. ..
RNA Sequencing:Article Title: DHH1/DDX6-like RNA helicases maintain ephemeral half-lives of stress-response mRNAs.
Article Snippet: .. Software and code Policy information about availability of computer code Data collection For growth phenotypes: Canon EOS Rebel T1i camera For microscopy: Keyence BZ-X800, Leica SP5 For qPCR: CFX ConnectTM Real-Time PCR Detection System For polysome profile: Brandel Density Gradient Fractionation System For western blots: Biorad Chemidoc MP Imaging system For RNA-seq: Illumina NextSeq500 Data analysis For phenotype and confocal imaging: LAS X, Fiji software For phylogenetic analysis: MEGA7, Interactive Tree of Life (iTOL) software For polysome profile: Brandel PeakChart software For RNA-seq and RNA decay data: R v3.4, systemPipeR v1.20.0, Bowtie2 v2.2.5, Tophat v2.0.14, edgeR v3.28.1, RNAdecay, ggplot2 v3.3.0, easyGplot2 1.0, ComplexHeatmap 2.2.0 For statistical analysis: R v3.4, agricolae v1.3-2 For manuscripts utilizing custom algorithms or software that are central to the research but not yet described in published literature, software must be made available to editors/reviewers. ..
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